Gene: AT5G59550
     

Gene description


TAIR ID: AT5G59550

Short description: zinc finger (C3HC4-type RING finger) family protein

Pathogen responsiveness: 0.25

General responsiveness: -0.24

Orthologous


Rice: No orthologous gene
Maize: No orthologous gene
Wheat: No orthologous gene

GO biological process


response to water deprivation, proteasome-mediated ubiquitin-dependent protein catabolic process, protein polyubiquitination, protein autoubiquitination, protein ubiquitination involved in ubiquitin-dependent protein catabolic process, response to abscisic acid, response to chitin


GO cellular component


nucleus


GO molecular function


ubiquitin protein ligase activity, ubiquitin-protein transferase activity


Protein domain


PfamPF13639, Ring finger domain
PfamPF06547, Protein of unknown function (DUF1117)
PfamPF14369, zinc-ribbon
SMARTSM00184, RING

Metabolic pathway


Not involved in metabolic pathway


KEGG pathway


Not involved in KEGG pathway


Transcriptional regulation


Regulator:
AT5G11260, AT5G41315

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 1

click to view PPI network

Differentially expressed condition


25 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE12856Col, ataf1, controlCol, ataf1, Bg h1.957.76E-07
GSE17464Laer, controlLaer, Flg22 1 h2.051.49E-04
GSE17464Penta, controlPenta, Flg22 2 h2.157.13E-05
GSE17500Col, 35S:AFB1, control 0 hCol, 35S:AFB1, PstDC3000 24 h1.595.77E-05
GSE17500Col, miR393, control 0 hCol, miR393, PstDC3000 24 h1.712.54E-05
GSE18978Col, WT, control 24 hCol, WT, PsmES4326 24 h2.453.53E-12
GSE2169Col, rre1, waterCol, rre1, chitin 30 min2.162.45E-11
GSE2169Col, rre2, waterCol, rre2, chitin 30 min1.882.82E-10
GSE2538Col, WT, controlCol, WT, crab shell chitin 30 min2.755.28E-08
GSE2538Col, WT, controlCol, WT, purified chitin octamer 30 min2.521.05E-07
GSE40544Col, WT, controlCol, WT, PstDC3000 EV1.534.07E-05
GSE45214Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 4 h2.601.17E-12
GSE45214Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 4 h1.735.41E-10
GSE45214Col, med16, PstDC3000 AvrRpt2 0 hCol, med16, PstDC3000 AvrRpt2 4 h2.411.32E-12
GSE45214Col, npr1, PstDC3000 AvrRpt2 0 hCol, npr1, PstDC3000 AvrRpt2 4 h2.328.38E-12
GSE4746Col, WT, water 30 minCol, WT, chitooctaose 30 min2.111.38E-04
GSE50526Col, WT, mock 9 hCol, WT, A. brassicicola 9 h2.511.16E-04
GSE5520Col, WT, control 10 hCol, WT, Cor- 10 h2.464.18E-04
GSE5520Col, WT, control 24 hCol, WT, PstDC3000 24 h1.534.29E-02
GSE5520Col, WT, control 7 hCol, WT, PstDC3000 7 h1.751.88E-03
GSE5615Col, WT, water 4 hCol, WT, HrpZ 4 h1.682.19E-06
GSE5616Col, WT, water 6 hCol, WT, P. infestans 6 h2.202.50E-05
GSE58954Col, WT, Psm AvrRpt2 0 hCol, WT, Psm AvrRpt2 6 h1.642.43E-02
GSE8319Col, WT, controlCol, WT, chitooctaose 30 min2.477.23E-13
GSE9674Ws-4, AtMYB30 ox, controlWs-4, AtMYB30 ox, Xanthomonas strain Xcc147 2-4 h1.535.44E-03






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