gene detail

Gene description

TAIR ID: AT5G59200

Short description: Tetratricopeptide repeat (TPR)-like superfamily protein

Pathogen responsiveness: -1.45

General responsiveness: -4.14

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

chloroplast RNA modification, chloroplast RNA processing, mRNA processing

GO cellular component

chloroplast, mitochondrion

GO molecular function

endonuclease activity, RNA binding

Protein domain

Pfam	PF01535, PPR repeat
Pfam	PF13041, PPR repeat family

Metabolic pathway

PWY-3781: aerobic respiration (cytochrome c)

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT5G61850

Target:
none

Protein-protein interaction network

No Interactor

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2 view

Differentially expressed condition

7 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE26679	Col, WT, GC 0 h	Col, WT, GC 18 h	3.48	3.27E-05
GSE26679	Col, WT, GC 0 h	Col, WT, GC 36 h	2.25	3.24E-03
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 18 h	2.33	2.28E-03
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 36 h	3.87	4.62E-06
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-2.34	1.23E-03
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-1.55	1.96E-02
GSE52979	Col, WT, oxo_C14_HSL	Col, WT, oxo_C14_HSL flg22_24 h	-1.51	2.22E-02