Gene: AT5G56960
     

Gene description


TAIR ID: AT5G56960

Short description: basic helix-loop-helix (bHLH) DNA-binding family protein

Pathogen responsiveness: NA

General responsiveness: NA

Orthologous


Rice: No orthologous gene
Maize:

GRMZM2G340177  

Wheat:

TAAFFX.65732.1.A1_AT  


GO biological process


response to chitin, regulation of transcription, DNA-templated, transcription


GO cellular component


nucleus


GO molecular function


transcription factor activity, sequence-specific DNA binding, protein dimerization activity, DNA binding


Protein domain


PfamPF00010, Helix-loop-helix DNA-binding domain
SMARTSM00353, HLH

Metabolic pathway


Not involved in metabolic pathway


KEGG pathway


Not involved in KEGG pathway


Transcriptional regulation


Regulator:
AT5G13790

Target:
none

Protein-protein interaction network


No Interactor


Differentially expressed condition


17 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE37269Di2, WT, controlDi2, WT, TEV 21 d1.986.89E-03
GSE37269Ei2, WT, controlEi2, WT, TEV 21 d-2.051.50E-03
GSE37269Ler0, WT, controlLer0, WT, TEV 21 d3.351.53E-07
GSE37269Wt1, WT, controlWt1, WT, TEV 21 d-1.898.02E-03
GSE40544Col, WT, controlCol, WT, PstDC3000 AvrRpt22.641.53E-03
GSE40544Col, WT, controlCol, WT, PstDC3000 EV3.262.27E-04
GSE40544Col, Sid2, controlCol, Sid2, PstDC3000 AvrRpt23.302.38E-04
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 12 h1.638.29E-12
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 4 h3.012.24E-15
GSE45214Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 4 h3.415.62E-06
GSE45214Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 4 h1.628.50E-03
GSE45214Col, med16, PstDC3000 AvrRpt2 0 hCol, med16, PstDC3000 AvrRpt2 4 h2.166.58E-04
GSE45214Col, npr1, PstDC3000 AvrRpt2 0 hCol, npr1, PstDC3000 AvrRpt2 4 h3.752.19E-06
GSE52979Col, WT, acetoneCol, WT, acetone flg22_24 h2.011.28E-02
GSE52979Col, WT, acetoneCol, WT, acetone flg22_2 h6.157.47E-08
GSE52979Col, WT, oxo_C14_HSLCol, WT, oxo_C14_HSL flg22_24 h1.594.25E-02
GSE52979Col, WT, oxo_C14_HSLCol, WT, oxo_C14_HSL flg22_2 h5.771.47E-07






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