gene detail

Gene description

TAIR ID: AT5G56340

Short description: RING/U-box superfamily protein

Pathogen responsiveness: -0.66

General responsiveness: -2.58

Orthologous

Rice:

OS03G0812200

Maize:

GRMZM2G027120

Wheat: No orthologous gene

GO biological process

proteasome-mediated ubiquitin-dependent protein catabolic process, protein polyubiquitination, protein ubiquitination involved in ubiquitin-dependent protein catabolic process

GO cellular component

unkown

GO molecular function

ubiquitin protein ligase activity

Protein domain

Pfam	PF13639, Ring finger domain
Pfam	PF14369, zinc-ribbon
SMART	SM00184, RING

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT4G36990

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 4

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE26679_WT_GC  view
GSE13739_EDS16_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view
GSE26679_EDR1_GC  view

Differentially expressed condition

16 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17464	Laer, control	Laer, Flg22 1 h	2.08	8.60E-07
GSE17464	Penta, control	Penta, Flg22 2 h	2.22	2.49E-07
GSE17464	Penta, control	Penta, Flg22 2 h	1.68	5.09E-05
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	1.74	1.64E-06
GSE21920	Col, WT, mock	Col, WT, Pto HopZ1a 6 h	1.81	3.31E-07
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	1.90	2.38E-13
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	1.91	3.27E-13
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	2.40	1.32E-14
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	1.70	1.03E-12
GSE45214	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 4 h	2.08	1.55E-07
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	2.15	5.49E-08
GSE45214	Col, npr1, PstDC3000 AvrRpt2 0 h	Col, npr1, PstDC3000 AvrRpt2 4 h	1.74	2.30E-06
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	2.04	9.58E-06
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	2.00	9.47E-04
GSE9674	Ws-4, AtMYB30 ox, control	Ws-4, AtMYB30 ox, Xanthomonas strain Xcc147 6 h	1.72	1.16E-04
GSE9674	Ws-4, WT, control	Ws-4, WT, Xanthomonas strain Xcc147 6 h	1.84	8.35E-05