gene detail

Gene description

TAIR ID: AT5G54730

Short description: homolog of yeast autophagy 18 (ATG18) F

Pathogen responsiveness: -1.23

General responsiveness: -1.17

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

autophagy, response to starvation, vesicle-mediated transport, protein transport

GO cellular component

pre-autophagosomal structure membrane, vacuolar membrane, cytoplasm

GO molecular function

molecular_function

Protein domain

Pfam	PF12490, Breast carcinoma amplified sequence 3
SMART	SM00320, WD40

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT5G61850

Target:
none

Protein-protein interaction network

No Interactor

Coexpression network

Differentially expressed condition

9 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	1.58	2.43E-04
GSE17500	Col, miR393, control 0 h	Col, miR393, PstDC3000 24 h	1.68	1.92E-04
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	1.78	2.29E-05
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-1.71	7.85E-03
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	1.82	1.50E-02
GSE56094	Col, WT, control 10 h	Col, WT, PstDC3000 10 h	2.13	2.66E-20
GSE56094	Col, WT, control 13 h	Col, WT, PstDC3000 13 h	1.85	9.01E-17
GSE56094	Col, WT, control 8 h	Col, WT, PstDC3000 8 h	1.68	3.69E-14
GSE6176	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	1.53	5.18E-06