gene detail

Gene description

TAIR ID: AT5G54250

Short description: cyclic nucleotide-gated cation channel 4

Pathogen responsiveness: -0.66

General responsiveness: 1.99

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G078781

Wheat:

TAAFFX.64449.1.A1_AT

GO biological process

plant-type hypersensitive response, regulation of membrane potential

GO cellular component

integral component of plasma membrane, plasma membrane, membrane, integral component of membrane

GO molecular function

voltage-gated potassium channel activity, cation transmembrane transporter activity, calmodulin binding, cGMP binding, ion channel activity, cation channel activity, cAMP binding

Protein domain

Pfam	PF00520, Ion transport protein
SMART	SM00100, cNMP

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT4G36990

Target:
none

Protein-protein interaction network

No Interactor

Coexpression network

GSE26679_WT_GC  view
GSE56094_WT_HRPA-  view
GSE13739_EDS16_GO  view
GSE56094_WT_PSTDC3000  view
GSE26679_EDR1_GC  view

Differentially expressed condition

12 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE11807	Col, ERF104 ox, water 4 h	Col, ERF104 ox, Flg22 4 h	-1.80	4.04E-03
GSE11807	Col, erf104 ko, water 4 h	Col, erf104 ko, Flg22 4 h	-1.63	7.93E-03
GSE11807	Col, mpk6 ko, water 4 h	Col, mpk6 ko, Flg22 4 h	-1.65	7.93E-03
GSE17382	Col, WT, Flg22 0 min	Col, WT, Flg22 60min	-1.90	2.54E-02
GSE17464	Laer, JA+Flg22 0 h	Laer, JA+Flg22 2 h	-2.34	2.84E-04
GSE17464	Laer, control	Laer, Flg22 2 h	-1.79	1.27E-03
GSE17464	Penta, control	Penta, Flg22 2 h	-2.14	1.44E-04
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-2.04	1.76E-03
GSE52979	Col, WT, acetone	Col, WT, acetone flg22_2 h	-1.60	6.88E-06
GSE52979	Col, WT, oxo_C14_HSL	Col, WT, oxo_C14_HSL flg22_2 h	-1.58	6.90E-06
GSE56094	Col, WT, control 5 h	Col, WT, hrpA- 5 h	-1.65	1.12E-08
GSE5615	Col, WT, water 4 h	Col, WT, HrpZ 4 h	-1.58	1.77E-05