Gene: AT5G48730
Gene description
TAIR ID: AT5G48730
Short description: Pentatricopeptide repeat (PPR) superfamily protein
Pathogen responsiveness: -0.64
General responsiveness: -0.58
GO biological process
biological_process
GO cellular component
chloroplast
GO molecular function
unkown
Protein domain
| Pfam | PF13812, Pentatricopeptide repeat domain |
| Pfam | PF01535, PPR repeat |
| Pfam | PF13041, PPR repeat family |
Metabolic pathway
Not involved in metabolic pathway
KEGG pathway
Not involved in KEGG pathway
Protein-protein interaction network
No Interactor
Coexpression network
Differentially expressed condition 
13 conditions
| Series | Control | Treatment | Log2FC | Adj. P value |
|---|---|---|---|---|
| GSE12856 | Col, WT, control | Col, WT, Bg h | -1.55 | 1.85E-08 |
| GSE12856 | Col, ataf1, control | Col, ataf1, Bg h | -1.62 | 8.93E-09 |
| GSE17464 | Penta, control | Penta, Flg22 2 h | -1.60 | 1.89E-05 |
| GSE17464 | Penta, control | Penta, Flg22 2 h | -1.63 | 1.96E-05 |
| GSE17500 | Col, miR393, control 0 h | Col, miR393, PstDC3000 24 h | -1.71 | 2.06E-04 |
| GSE18978 | Col, WT, control 24 h | Col, WT, PsmES4326 24 h | -2.07 | 3.38E-08 |
| GSE21920 | Col, WT, mock | Col, WT, Pto HopZ1a 6 h | -1.82 | 1.55E-04 |
| GSE40544 | Col, WT, control | Col, WT, PstDC3000 EV | -1.57 | 1.22E-04 |
| GSE45212 | Col, WT, PstDC3000 AvrRpt2 0 h | Col, WT, PstDC3000 AvrRpt2 12 h | -1.98 | 5.57E-12 |
| GSE45214 | Col, med14, PstDC3000 AvrRpt2 0 h | Col, med14, PstDC3000 AvrRpt2 4 h | -1.62 | 2.90E-10 |
| GSE45214 | Col, med16, PstDC3000 AvrRpt2 0 h | Col, med16, PstDC3000 AvrRpt2 4 h | -2.39 | 2.94E-13 |
| GSE5520 | Col, WT, control 7 h | Col, WT, PstDC3000 7 h | -1.83 | 2.46E-05 |
| GSE6176 | Col, WT, control 12 h | Col, WT, PstDC3000 12 h | -1.72 | 1.83E-09 |
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