gene detail

Gene description

TAIR ID: AT5G47050

Short description: SBP (S-ribonuclease binding protein) family protein

Pathogen responsiveness: -0.94

General responsiveness: -0.02

Orthologous

Rice:

OS10G0565500 OS02G0687500

Maize:

GRMZM2G039725 GRMZM2G110988

Wheat: No orthologous gene

GO biological process

unkown

GO cellular component

nucleus

GO molecular function

unkown

Protein domain

Pfam	PF13920, Zinc finger, C3HC4 type (RING finger)

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

No regulation information

Protein-protein interaction network

No Interactor

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view
GSE26679_EDR1_GC  view

Differentially expressed condition

8 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	1.68	7.99E-06
GSE21920	Col, WT, mock	Col, WT, Pto HopZ1a 6 h	1.74	3.05E-08
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	2.24	1.57E-12
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	1.57	3.46E-10
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	2.42	5.89E-13
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	2.16	2.45E-12
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	1.62	9.43E-04
GSE5615	Col, WT, water 4 h	Col, WT, HrpZ 4 h	1.52	1.74E-05