gene detail

Gene description

TAIR ID: AT5G45900

Short description: ThiF family protein

Pathogen responsiveness: -1.32

General responsiveness: -2.06

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G005304

Wheat:

TA.18890.1.S1_AT

GO biological process

C-terminal protein lipidation, autophagy, autophagy of mitochondrion, protein lipidation, cellular response to nitrogen starvation, piecemeal microautophagy of nucleus, late nucleophagy, leaf senescence, defense response to fungus, protein transport, autophagosome assembly

GO cellular component

pre-autophagosomal structure, cytosol

GO molecular function

Atg8 activating enzyme activity, Atg12 activating enzyme activity

Protein domain

Pfam	PF16420, Ubiquitin-like modifier-activating enzyme ATG7 N-terminus
Pfam	PF00899, ThiF family

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath04136: Autophagy - other eukaryotes

Transcriptional regulation

Regulator:
AT4G16110

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 5

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE13739_WT_GO  view
GSE56094_WT_PSTDC3000  view

Differentially expressed condition

6 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	1.99	4.94E-07
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	2.05	7.21E-10
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	1.72	1.09E-08
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	1.57	1.98E-11
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	1.58	3.00E-03
GSE56094	Col, WT, control 13 h	Col, WT, PstDC3000 13 h	2.00	7.49E-18