Gene: AT5G42820
     

Gene description


TAIR ID: AT5G42820

Short description: Zinc finger C-x8-C-x5-C-x3-H type family protein

Pathogen responsiveness: -1.91

General responsiveness: -1.82

Orthologous


Rice:

OS05G0564200  

Maize:

GRMZM2G025014   GRMZM2G020928  

Wheat: No orthologous gene

GO biological process


photoperiodism, flowering, mRNA splicing, via spliceosome


GO cellular component


spliceosomal complex, nuclear speck, U2AF, nucleus


GO molecular function


protein binding, pre-mRNA 3'-splice site binding, DNA binding, metal ion binding


Protein domain


PfamPF00642, Zinc finger C-x8-C-x5-C-x3-H type (and similar)
PfamPF00076, RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
SMARTSM00361, RRM_1
SMARTSM00356, ZnF_C3H1

Metabolic pathway


Not involved in metabolic pathway


Transcriptional regulation


Regulator:
AT3G27920

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 9 (Top20%)

click to view PPI network

Differentially expressed condition


4 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE26679Col, WT, GC 0 hCol, WT, GC 18 h2.041.29E-10
GSE26679Col, WT, GC 0 hCol, WT, GC 36 h2.077.63E-11
GSE26679Col, edr1, GC 0 hCol, edr1, GC 18 h2.261.71E-11
GSE26679Col, edr1, GC 0 hCol, edr1, GC 36 h2.325.98E-12






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