gene detail

Gene description

TAIR ID: AT5G40190

Short description: RNA ligase/cyclic nucleotide phosphodiesterase family protein

Pathogen responsiveness: -2.82

General responsiveness: -3.47

Orthologous

Rice:

OS09G0375400

Maize:

GRMZM2G085022 GRMZM2G110358

Wheat: No orthologous gene

GO biological process

unkown

GO cellular component

unkown

GO molecular function

ligase activity

Protein domain

Pfam	PF13563, 2'-5' RNA ligase superfamily

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT5G13790, AT5G67300

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 4

click to view PPI network

Coexpression network

GSE26679_WT_GC  view
GSE13739_EDS16_GO  view
GSE26679_EDR1_GC  view

Differentially expressed condition

1 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 36 h	1.55	9.41E-09