Gene: AT5G23080
     

Gene description


TAIR ID: AT5G23080

Short description: SWAP (Suppressor-of-White-APricot)/surp domain-containing protein

Pathogen responsiveness: -2.29

General responsiveness: -1.71

Orthologous


Rice:

OS06G0489200  

Maize:

GRMZM2G131482  

Wheat: No orthologous gene

GO biological process


phloem or xylem histogenesis, regulation of growth, RNA processing, production of siRNA involved in RNA interference, production of miRNAs involved in gene silencing by miRNA, mRNA processing


GO cellular component


nucleus, nuclear speck


GO molecular function


unkown


Protein domain


PfamPF07713, Protein of unknown function (DUF1604)
PfamPF01805, Surp module
SMARTSM00648, SWAP

Metabolic pathway


Not involved in metabolic pathway


KEGG pathway


Not involved in KEGG pathway


Transcriptional regulation


Regulator:
AT3G15270, AT2G47070, AT1G53160, AT4G36990

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 1

click to view PPI network

Differentially expressed condition


5 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE26679Col, WT, GC 0 hCol, WT, GC 18 h1.521.48E-09
GSE26679Col, WT, GC 0 hCol, WT, GC 36 h1.594.91E-10
GSE26679Col, edr1, GC 0 hCol, edr1, GC 18 h1.711.51E-10
GSE26679Col, edr1, GC 0 hCol, edr1, GC 36 h1.832.31E-11
GSE37269Oy0, WT, controlOy0, WT, TEV 21 d-2.094.39E-02






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