gene detail

Gene description

TAIR ID: AT5G20910

Short description: RING/U-box superfamily protein

Pathogen responsiveness: -0.42

General responsiveness: -1.05

Orthologous

Rice:

OS09G0434200

Maize:

GRMZM2G140160

Wheat: No orthologous gene

GO biological process

protein ubiquitination involved in ubiquitin-dependent protein catabolic process, protein ubiquitination, protein polyubiquitination, negative regulation of abscisic acid-activated signaling pathway, proteasome-mediated ubiquitin-dependent protein catabolic process, abscisic acid-activated signaling pathway, response to abscisic acid

GO cellular component

cytosol, nucleus

GO molecular function

ubiquitin protein ligase activity, protein binding, ubiquitin-protein transferase activity, metal ion binding

Protein domain

Pfam	PF13639, Ring finger domain
SMART	SM00184, RING

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT5G56110, AT5G53660, AT3G16857, AT4G16110

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 1

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

15 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	1.85	5.67E-06
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	2.96	8.74E-11
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	2.23	1.03E-13
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	1.85	2.07E-12
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	2.17	1.69E-13
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	1.99	7.14E-13
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	2.74	6.55E-15
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	1.83	1.20E-13
GSE50526	Col, WT, mock 9 h	Col, WT, A. brassicicola 9 h	1.82	2.18E-04
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	1.78	2.39E-05
GSE56094	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	1.64	1.71E-14
GSE56094	Col, WT, control 13 h	Col, WT, PstDC3000 13 h	1.67	3.42E-15
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	1.98	1.93E-03
GSE9674	Ws-4, AtMYB30 ox, control	Ws-4, AtMYB30 ox, Xanthomonas strain Xcc147 6 h	2.35	4.32E-05
GSE9674	Ws-4, WT, control	Ws-4, WT, Xanthomonas strain Xcc147 6 h	1.96	1.71E-04