gene detail

Gene description

TAIR ID: AT5G17290

Short description: autophagy protein Apg5 family

Pathogen responsiveness: -1.83

General responsiveness: -3.10

Orthologous

Rice:

OS02G0117800

Maize:

GRMZM2G098420

Wheat: No orthologous gene

GO biological process

autophagy of mitochondrion, leaf senescence, autophagy, cellular response to nitrogen starvation, autophagosome assembly, autophagy of nucleus, response to starvation, C-terminal protein lipidation, defense response to fungus, protein transport

GO cellular component

Atg12-Atg5-Atg16 complex, pre-autophagosomal structure membrane, cytoplasm

GO molecular function

Atg8 ligase activity, transporter activity

Protein domain

Pfam	PF04106, Autophagy protein Apg5

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath04136: Autophagy - other eukaryotes

Transcriptional regulation

Regulator:
AT5G11260

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 2

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE26679_WT_GC  view
GSE56094_WT_HRPA-  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view
GSE26679_EDR1_GC  view

Differentially expressed condition

4 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	1.54	5.88E-04
GSE26679	Col, WT, GC 0 h	Col, WT, GC 18 h	1.81	2.68E-11
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 18 h	1.83	1.76E-11
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 36 h	1.54	2.36E-10