gene detail

Gene description

TAIR ID: AT5G16830

Short description: syntaxin of plants 21

Pathogen responsiveness: -1.05

General responsiveness: -1.43

Orthologous

Rice:

OS01G0254900 OS01G0179200

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

protein targeting to vacuole, intracellular protein transport, membrane fusion, vesicle fusion, vesicle docking, late endosome to vacuole transport, Golgi to vacuole transport

GO cellular component

trans-Golgi network transport vesicle, late endosome, SNARE complex, late endosome membrane, Golgi apparatus, membrane, integral component of membrane

GO molecular function

SNAP receptor activity, SNARE binding, protein binding

Protein domain

Pfam	PF14523, Syntaxin-like protein
Pfam	PF05739, SNARE domain
SMART	SM00397, t_SNARE
SMART	SM00503, SynN

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

No regulation information

Protein-protein interaction network

The number of partners (degree) is: 56 (Top5%)

click to view PPI network

Coexpression network

GSE56094_WT_HRPA- view
GSE56094_WT_PSTDC3000 view

Differentially expressed condition

7 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17464	Laer, control	Laer, Flg22 1 h	1.86	6.39E-10
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	1.75	7.26E-04
GSE5520	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	1.63	4.89E-02
GSE56094	Col, WT, control 10 h	Col, WT, PstDC3000 10 h	1.86	2.26E-18
GSE56094	Col, WT, control 11 h	Col, WT, PstDC3000 11 h	1.64	4.88E-15
GSE56094	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	1.58	2.22E-14
GSE56094	Col, WT, control 13 h	Col, WT, PstDC3000 13 h	1.82	1.07E-17