Gene: AT5G16630
     

Gene description


TAIR ID: AT5G16630

Short description: DNA repair protein Rad4 family

Pathogen responsiveness: -1.60

General responsiveness: -2.98

Orthologous


Rice:

OS08G0427500  

Maize:

GRMZM2G095931  

Wheat: No orthologous gene

GO biological process


nucleotide-excision repair, mismatch repair


GO cellular component


chloroplast, nucleus, nucleotide-excision repair factor 2 complex, XPC complex


GO molecular function


single-stranded DNA binding, damaged DNA binding


Protein domain


PfamPF10404, Rad4 beta-hairpin domain 2
PfamPF10403, Rad4 beta-hairpin domain 1
PfamPF01841, Transglutaminase-like superfamily
PfamPF03835, Rad4 transglutaminase-like domain
PfamPF10405, Rad4 beta-hairpin domain 3
SMARTSM01032, BHD_3
SMARTSM01030, BHD_1
SMARTSM01031, BHD_2

Metabolic pathway


Not involved in metabolic pathway


Transcriptional regulation


Regulator:
AT5G11260

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 1

click to view PPI network

Differentially expressed condition


2 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE26679Col, edr1, GC 0 hCol, edr1, GC 36 h1.874.78E-10
GSE37269St0, WT, controlSt0, WT, TEV 21 d-1.701.06E-02






Copyright © 2017 Ziding Zhang's Lab - China Agricultural University. All Rights Reserved.