gene detail

Gene description

TAIR ID: AT5G13010

Short description: RNA helicase family protein

Pathogen responsiveness: -1.77

General responsiveness: -1.32

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G480809

Wheat: No orthologous gene

GO biological process

primary miRNA processing, xylem and phloem pattern formation, mRNA splicing, via spliceosome, RNA splicing, positive regulation of protein complex assembly, root hair elongation, embryo development ending in seed dormancy, defense response to fungus, incompatible interaction

GO cellular component

cytoplasm, nucleus, spliceosomal complex

GO molecular function

RNA helicase activity, ATP-dependent RNA helicase activity, RNA binding

Protein domain

Pfam	PF00271, Helicase conserved C-terminal domain
Pfam	PF00270, DEAD/DEAH box helicase
Pfam	PF04408, Helicase associated domain (HA2)
Pfam	PF07717, Oligonucleotide/oligosaccharide-binding (OB)-fold
SMART	SM00847, HA2
SMART	SM00490, HELICc
SMART	SM00487, DEXDc

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath03040: Spliceosome

Transcriptional regulation

Regulator:
AT4G16110

Target:
none

Protein-protein interaction network

No Interactor

Coexpression network

GSE26679_WT_GC  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE26679_EDR1_GC  view

Differentially expressed condition

6 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	1.51	2.29E-05
GSE26679	Col, WT, GC 0 h	Col, WT, GC 18 h	1.76	2.18E-12
GSE26679	Col, WT, GC 0 h	Col, WT, GC 36 h	1.61	7.35E-12
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 18 h	1.99	1.97E-13
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 36 h	1.91	1.89E-13
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-1.60	8.38E-03