gene detail

Gene description

TAIR ID: AT5G10960

Short description: Polynucleotidyl transferase, ribonuclease H-like superfamily protein

Pathogen responsiveness: -2.20

General responsiveness: -1.29

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

regulation of transcription, DNA-templated, RNA modification, transcription

GO cellular component

nucleus, cytoplasm

GO molecular function

metal ion binding, ribonuclease activity, RNA binding

Protein domain

Pfam	PF04857, CAF1 family ribonuclease

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath03018: RNA degradation

Transcriptional regulation

Regulator:
AT4G16110

Target:
none

Protein-protein interaction network

No Interactor

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE26679_WT_GC  view
GSE26679_EDR1_GC  view

Differentially expressed condition

5 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE26679	Col, WT, GC 0 h	Col, WT, GC 18 h	1.64	1.09E-08
GSE26679	Col, WT, GC 0 h	Col, WT, GC 36 h	1.53	2.79E-08
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 36 h	1.68	3.58E-09
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-1.56	1.60E-02
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-1.66	6.77E-03