gene detail

Gene description

TAIR ID: AT5G07090

Short description: Ribosomal protein S4 (RPS4A) family protein

Pathogen responsiveness: -1.74

General responsiveness: -2.02

Orthologous

Rice: No orthologous gene

Maize:

Wheat:

GO biological process

translation

GO cellular component

ribosome, cytoplasm, cytosolic ribosome, vacuolar membrane, cytosolic small ribosomal subunit

GO molecular function

rRNA binding

Protein domain

Pfam	PF01479, S4 domain
Pfam	PF16121, 40S ribosomal protein S4 C-terminus
Pfam	PF00900, Ribosomal family S4e
Pfam	PF00467, KOW motif
Pfam	PF08071, RS4NT (NUC023) domain
SMART	SM00739, KOW

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath03010: Ribosome

Transcriptional regulation

Regulator:
AT5G49450

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 1

Coexpression network

Differentially expressed condition

3 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17500	Col, miR393, control 0 h	Col, miR393, PstDC3000 24 h	-1.51	1.05E-04
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-2.30	6.51E-06
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	-1.57	5.06E-10