Gene: AT5G05100
     

Gene description


TAIR ID: AT5G05100

Short description: Single-stranded nucleic acid binding R3H protein

Pathogen responsiveness: -0.77

General responsiveness: -1.54

Orthologous


Rice: No orthologous gene
Maize: No orthologous gene
Wheat: No orthologous gene

GO biological process


unkown


GO cellular component


nucleus


GO molecular function


unkown


Protein domain


PfamPF12752, SUZ domain
PfamPF01424, R3H domain
SMARTSM00393, R3H

Metabolic pathway


Not involved in metabolic pathway


KEGG pathway


Not involved in KEGG pathway


Transcriptional regulation


Regulator:
AT5G13790, AT5G61850

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 2

click to view PPI network

Differentially expressed condition


13 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE17500Col, miR393, control 0 hCol, miR393, PstDC3000 24 h1.626.86E-05
GSE26679Col, WT, GC 0 hCol, WT, GC 18 h1.656.72E-11
GSE26679Col, WT, GC 0 hCol, WT, GC 36 h1.636.67E-11
GSE26679Col, edr1, GC 0 hCol, edr1, GC 18 h1.857.05E-12
GSE26679Col, edr1, GC 0 hCol, edr1, GC 36 h1.902.52E-12
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 12 h1.611.32E-10
GSE5520Col, WT, control 10 hCol, WT, Cor- 10 h2.031.69E-06
GSE5520Col, WT, control 7 hCol, WT, PstDC3000 7 h1.601.82E-06
GSE56094Col, WT, control 10 hCol, WT, PstDC3000 10 h2.081.35E-26
GSE56094Col, WT, control 11 hCol, WT, PstDC3000 11 h1.814.81E-22
GSE56094Col, WT, control 12 hCol, WT, PstDC3000 12 h1.552.84E-18
GSE56094Col, WT, control 13 hCol, WT, PstDC3000 13 h1.959.91E-25
GSE56094Col, WT, control 8 hCol, WT, PstDC3000 8 h1.701.77E-20






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