gene detail

Gene description

TAIR ID: AT5G04430

Short description: binding to TOMV RNA 1L (long form)

Pathogen responsiveness: -1.39

General responsiveness: -2.74

Orthologous

Rice: No orthologous gene

Maize:

Wheat: No orthologous gene

GO biological process

regulation by virus of viral protein levels in host cell, response to cytokinin, RNA splicing

GO cellular component

cytoplasm, nucleus

GO molecular function

unkown

Protein domain

Pfam	PF00013, KH domain
SMART	SM00322, KH

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT3G15270, AT2G47070, AT1G53160

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 3

Coexpression network

Differentially expressed condition

5 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	-1.68	6.12E-06
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-2.54	8.30E-10
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-1.74	4.57E-08
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	-1.81	3.02E-08
GSE6556	Col, gh3.5, control	Col, gh3.5, PstDC3000 AvrRpt2 48 h	-1.57	1.61E-04