Gene: AT5G04280
     

Gene description


TAIR ID: AT5G04280

Short description: RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain

Pathogen responsiveness: -3.63

General responsiveness: -3.36

Orthologous


Rice: No orthologous gene
Maize:

GRMZM2G083783  

Wheat:

TA.24764.2.A1_AT  TA.24764.2.A1_A_AT  


GO biological process


positive regulation of mRNA splicing, via spliceosome, negative regulation of transcription, DNA-templated, response to cold, response to water deprivation


GO cellular component


nucleolus, nucleus


GO molecular function


zinc ion binding


Protein domain


PfamPF00098, Zinc knuckle
PfamPF00076, RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
SMARTSM00343, ZnF_C2HC
SMARTSM00360, RRM

Metabolic pathway


Not involved in metabolic pathway


Transcriptional regulation


Regulator:
AT1G73805, AT5G26920

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 10 (Top20%)

click to view PPI network

Coexpression network

GSE13739_EDS16_GO  view

Differentially expressed condition


Copyright © 2017 Ziding Zhang's Lab - China Agricultural University. All Rights Reserved.