gene detail

Gene description

TAIR ID: AT5G04150

Short description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Pathogen responsiveness: -0.95

General responsiveness: -0.10

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat:

TAAFFX.56618.1.A1_AT TA.5544.1.A1_AT

GO biological process

regulation of transcription, DNA-templated, regulation of transcription from RNA polymerase II promoter, cellular response to iron ion starvation, iron ion homeostasis, transcription

GO cellular component

RNA polymerase II transcription factor complex, nucleus

GO molecular function

transcription factor activity, sequence-specific DNA binding, DNA binding, protein binding, protein dimerization activity, RNA polymerase II regulatory region sequence-specific DNA binding

Protein domain

Pfam	PF00010, Helix-loop-helix DNA-binding domain
SMART	SM00353, HLH

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT5G61850

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 2

click to view PPI network

Coexpression network

GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE56094_WT_PSTDC3000  view

Differentially expressed condition

9 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE13739	Col, eds, control 0 h	Col, eds, G.orontii 6 h	2.07	4.03E-02
GSE21920	Col, WT, mock	Col, WT, Pto HopZ1a 6 h	-1.56	4.91E-06
GSE26679	Col, WT, GC 0 h	Col, WT, GC 18 h	-1.73	6.30E-07
GSE26679	Col, WT, GC 0 h	Col, WT, GC 36 h	-2.00	5.28E-08
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 18 h	-1.77	3.84E-07
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 36 h	-1.94	5.55E-08
GSE37269	Di2, WT, control	Di2, WT, TEV 21 d	3.10	4.18E-04
GSE6556	Col, WT, control	Col, WT, PstDC3000 AvrRpt2 48 h	-1.58	1.24E-02
GSE6556	Col, gh3.5, control	Col, gh3.5, PstDC3000 AvrRpt2 48 h	-2.65	7.85E-05