Gene: AT5G03340
     

Gene description


TAIR ID: AT5G03340

Short description: ATPase, AAA-type, CDC48 protein

Pathogen responsiveness: -1.75

General responsiveness: -0.45

Orthologous


Rice: No orthologous gene
Maize:

GRMZM2G036765  

Wheat: No orthologous gene

GO biological process


protein transport, cell division, cell cycle


GO cellular component


phragmoplast, cell wall, nucleus, cytosol, cytoskeleton, Golgi apparatus


GO molecular function


ATPase activity, ATP binding, hydrolase activity


Protein domain


PfamPF02933, Cell division protein 48 (CDC48), domain 2
PfamPF02359, Cell division protein 48 (CDC48), N-terminal domain
PfamPF00004, ATPase family associated with various cellular activities (AAA)
SMARTSM00382, AAA
SMARTSM01072, CDC48_2
SMARTSM01073, CDC48_N

Metabolic pathway


Not involved in metabolic pathway


Transcriptional regulation


No regulation information

Protein-protein interaction network


The number of partners (degree) is: 2

click to view PPI network

Differentially expressed condition


4 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE17500Col, WT, control 0 hCol, WT, PstDC3000 24 h1.687.88E-06
GSE58954Col, WT, Psm AvrRpt2 0 hCol, WT, Psm AvrRpt2 6 h1.552.80E-03
GSE9674Ws-4, AtMYB30 ox, controlWs-4, AtMYB30 ox, Xanthomonas strain Xcc147 6 h2.033.14E-04
GSE9674Ws-4, WT, controlWs-4, WT, Xanthomonas strain Xcc147 6 h1.532.14E-03






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