Gene: AT5G02840

Gene description

TAIR ID: AT5G02840

Short description: LHY/CCA1-like 1

Pathogen responsiveness: -0.87

General responsiveness: -0.19


Rice: No orthologous gene
Maize: No orthologous gene
Wheat: No orthologous gene

GO biological process

regulation of circadian rhythm, response to cadmium ion, response to salt stress, transcription, DNA-templated, regulation of transcription, response to jasmonic acid, response to salicylic acid, response to gibberellin, circadian rhythm, response to abscisic acid, response to ethylene, response to auxin

GO cellular component

cytoplasm, nucleus

GO molecular function

DNA binding, transcription factor activity, sequence-specific DNA binding

Protein domain

PfamPF00249, Myb-like DNA-binding domain

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation


AT5G44030, AT4G28370, AT3G10340

Protein-protein interaction network

The number of partners (degree) is: 2

click to view PPI network

Differentially expressed condition

12 conditions

SeriesControlTreatmentLog2FCAdj. P value
GSE12856Col, WT, controlCol, WT, Bg h-1.922.58E-09
GSE12856Col, ataf1, controlCol, ataf1, Bg h-1.724.73E-09
GSE17464Laer, controlLaer, PstDC3000 12 h1.587.90E-03
GSE26679Col, WT, GC 0 hCol, WT, GC 18 h1.526.22E-09
GSE26679Col, edr1, GC 0 hCol, edr1, GC 18 h1.631.68E-09
GSE37269St0, WT, controlSt0, WT, TEV 21 d-1.719.44E-03
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 12 h-1.817.23E-12
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 8 h-2.262.89E-13
GSE45214Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 4 h-1.665.26E-12
GSE58954Col, WT, Psm AvrRpt2 0 hCol, WT, Psm AvrRpt2 6 h-2.841.03E-03
GSE9674Ws-4, AtMYB30 ox, controlWs-4, AtMYB30 ox, Xanthomonas strain Xcc147 6 h-1.921.14E-02
GSE9674Ws-4, WT, controlWs-4, WT, Xanthomonas strain Xcc147 6 h-1.771.99E-02

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