Gene: AT5G02840
     

Gene description


TAIR ID: AT5G02840

Short description: LHY/CCA1-like 1

Pathogen responsiveness: -0.87

General responsiveness: -0.19

Orthologous


Rice: No orthologous gene
Maize: No orthologous gene
Wheat: No orthologous gene

GO biological process


regulation of circadian rhythm, response to cadmium ion, response to salt stress, transcription, DNA-templated, regulation of transcription, response to jasmonic acid, response to salicylic acid, response to gibberellin, circadian rhythm, response to abscisic acid, response to ethylene, response to auxin


GO cellular component


cytoplasm, nucleus


GO molecular function


DNA binding, transcription factor activity, sequence-specific DNA binding


Protein domain


PfamPF00249, Myb-like DNA-binding domain
SMARTSM00717, SANT

Metabolic pathway


Not involved in metabolic pathway


KEGG pathway


Not involved in KEGG pathway


Transcriptional regulation


Regulator:
none

Target:
AT5G44030, AT4G28370, AT3G10340

Protein-protein interaction network


The number of partners (degree) is: 2

click to view PPI network

Differentially expressed condition


12 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE12856Col, WT, controlCol, WT, Bg h-1.922.58E-09
GSE12856Col, ataf1, controlCol, ataf1, Bg h-1.724.73E-09
GSE17464Laer, controlLaer, PstDC3000 12 h1.587.90E-03
GSE26679Col, WT, GC 0 hCol, WT, GC 18 h1.526.22E-09
GSE26679Col, edr1, GC 0 hCol, edr1, GC 18 h1.631.68E-09
GSE37269St0, WT, controlSt0, WT, TEV 21 d-1.719.44E-03
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 12 h-1.817.23E-12
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 8 h-2.262.89E-13
GSE45214Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 4 h-1.665.26E-12
GSE58954Col, WT, Psm AvrRpt2 0 hCol, WT, Psm AvrRpt2 6 h-2.841.03E-03
GSE9674Ws-4, AtMYB30 ox, controlWs-4, AtMYB30 ox, Xanthomonas strain Xcc147 6 h-1.921.14E-02
GSE9674Ws-4, WT, controlWs-4, WT, Xanthomonas strain Xcc147 6 h-1.771.99E-02






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