gene detail

Gene description

TAIR ID: AT5G01530

Short description: light harvesting complex photosystem II

Pathogen responsiveness: -0.85

General responsiveness: 2.63

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G033885

Wheat: No orthologous gene

GO biological process

photosynthesis, light harvesting in photosystem I, protein-chromophore linkage, response to far red light, response to red light, response to blue light

GO cellular component

chloroplast thylakoid membrane, plastoglobule, photosystem I, chloroplast envelope, photosystem II, chloroplast, chloroplast thylakoid, thylakoid, membrane, integral component of membrane, light-harvesting complex

GO molecular function

metal ion binding, chlorophyll binding, pigment binding

Protein domain

Pfam	PF00504, Chlorophyll A-B binding protein

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath00196: Photosynthesis - antenna proteins

Transcriptional regulation

Regulator:
AT5G13790, AT5G61850

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 7

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE26679_WT_GC  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

13 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-1.93	5.28E-08
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-1.59	1.52E-07
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	-3.15	8.98E-12
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	-2.21	1.38E-09
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	-1.63	6.66E-04
GSE56094	Col, WT, control 10 h	Col, WT, PstDC3000 10 h	-2.12	2.63E-09
GSE56094	Col, WT, control 11 h	Col, WT, PstDC3000 11 h	-1.83	2.63E-07
GSE56094	Col, WT, control 11 h	Col, WT, hrpA- 11 h	-1.55	2.33E-05
GSE56094	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	-2.42	5.04E-11
GSE56094	Col, WT, control 13 h	Col, WT, PstDC3000 13 h	-1.68	1.49E-06
GSE56094	Col, WT, control 8 h	Col, WT, PstDC3000 8 h	-1.67	3.20E-06
GSE56094	Col, WT, control 8 h	Col, WT, hrpA- 8 h	-1.58	1.73E-05
GSE56094	Col, WT, control 9 h	Col, WT, PstDC3000 9 h	-1.70	2.12E-06