gene detail

Gene description

TAIR ID: AT4G33940

Short description: RING/U-box superfamily protein

Pathogen responsiveness: -1.13

General responsiveness: -0.63

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

response to chitin

GO cellular component

nucleus

GO molecular function

unkown

Protein domain

Pfam	PF00097, Zinc finger, C3HC4 type (RING finger)
SMART	SM00184, RING

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT5G13790

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 3

Coexpression network

Differentially expressed condition

5 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	1.54	3.24E-05
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	1.80	9.98E-10
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	1.62	1.64E-11
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	1.65	1.05E-06
GSE56094	Col, WT, control 10 h	Col, WT, PstDC3000 10 h	1.55	1.87E-12