gene detail

Gene description

TAIR ID: AT4G32770

Short description: tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defective 1 (SXD1)

Pathogen responsiveness: -0.44

General responsiveness: 1.05

Orthologous

Rice:

OS02G0276500

Maize:

GRMZM2G009785

Wheat: No orthologous gene

GO biological process

vitamin E biosynthetic process, phloem sucrose loading, fatty acid metabolic process, chlorophyll metabolic process, response to oxidative stress, response to temperature stimulus, regulation of defense response, response to high light intensity, xanthophyll metabolic process

GO cellular component

plastoglobule, chloroplast inner membrane, chloroplast, chloroplast envelope, chloroplast thylakoid

GO molecular function

tocopherol cyclase activity, isomerase activity

Protein domain

Pfam	PF14249, Tocopherol cyclase

Metabolic pathway

PWY-1422: vitamin E biosynthesis

KEGG pathway

PATH:ath00130: Ubiquinone and other terpenoid-quinone biosynthesis

Transcriptional regulation

Regulator:
AT4G36990

Target:
none

Protein-protein interaction network

No Interactor

Coexpression network

GSE26679_WT_GC  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE13739_EDS16_GO  view
GSE26679_EDR1_GC  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

9 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17464	Laer, control	Laer, PstDC3000 12 h	-2.07	4.56E-05
GSE17464	Penta, control	Penta, PstDC3000 12 h	-2.55	5.85E-07
GSE26679	Col, WT, GC 0 h	Col, WT, GC 18 h	-2.21	1.24E-10
GSE26679	Col, WT, GC 0 h	Col, WT, GC 36 h	-2.73	1.83E-12
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 18 h	-2.23	8.87E-11
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 36 h	-2.78	8.69E-13
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-2.14	2.37E-04
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-2.35	1.92E-05
GSE56094	Col, WT, control 8 h	Col, WT, hrpA- 8 h	-1.93	1.14E-09