gene detail

Gene description

TAIR ID: AT4G30220

Short description: small nuclear ribonucleoprotein F

Pathogen responsiveness: -2.72

General responsiveness: -2.37

Orthologous

Rice:

OS02G0177500 OS11G0657300

Maize:

GRMZM2G168252 GRMZM2G058252

Wheat:

TA.3293.1.S1_AT

GO biological process

mRNA splicing, via spliceosome, spliceosomal snRNP assembly

GO cellular component

nucleus, catalytic step 2 spliceosome, nucleolus, viral nucleocapsid, cytosol, spliceosomal complex, small nucleolar ribonucleoprotein complex, U1 snRNP

GO molecular function

RNA binding

Protein domain

Pfam	PF01423, LSM domain
SMART	SM00651, Sm

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath03040: Spliceosome

Transcriptional regulation

Regulator:
AT5G61850

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 8

click to view PPI network

Coexpression network

GSE56094_WT_HRPA-  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view

Differentially expressed condition

1 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-1.77	2.12E-05