Gene: AT4G27280
     

Gene description


TAIR ID: AT4G27280

Short description: Calcium-binding EF-hand family protein

Pathogen responsiveness: 1.46

General responsiveness: 1.52

Orthologous


Rice: No orthologous gene
Maize: No orthologous gene
Wheat: No orthologous gene

GO biological process


response to karrikin


GO cellular component


plasma membrane


GO molecular function


unkown


Protein domain


PfamPF13833, EF-hand domain pair

Metabolic pathway


Not involved in metabolic pathway


KEGG pathway


Not involved in KEGG pathway


Transcriptional regulation


Regulator:
AT5G13790, AT5G11260

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 1

click to view PPI network

Differentially expressed condition


51 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE12856Col, WT, controlCol, WT, Bg h1.879.35E-07
GSE12856Col, ataf1, controlCol, ataf1, Bg h2.702.47E-08
GSE13739Col, WT, control 0 hCol, WT, G.orontii 6 h2.269.34E-04
GSE13739Col, WT, control 7 dCol, WT, G.orontii 7 d2.528.68E-05
GSE13739Col, eds, control 0 hCol, eds, G.orontii 6 h2.231.19E-03
GSE16472Col, WT, Flg22 0 minCol, WT, Flg22 30 min2.802.87E-02
GSE17464Laer, controlLaer, Flg22 1 h2.044.49E-03
GSE17464Penta, controlPenta, Alternaria brassicicola 3 d-1.771.66E-02
GSE17464Penta, controlPenta, Flg22 2 h1.513.91E-02
GSE17500Col, 35S:AFB1, control 0 hCol, 35S:AFB1, PstDC3000 24 h1.747.34E-04
GSE17500Col, WT, control 0 hCol, WT, PstDC3000 24 h2.158.25E-05
GSE17500Col, miR393, control 0 hCol, miR393, PstDC3000 24 h2.002.11E-04
GSE18329Col, WT, controlCol, WT, Hpa noco2 96 h1.955.92E-12
GSE18978Col, WT, control 24 hCol, WT, PsmES4326 24 h2.833.40E-07
GSE2169Col, WT, waterCol, WT, chitin 30 min2.294.72E-10
GSE2169Col, rre1, waterCol, rre1, chitin 30 min2.721.53E-11
GSE2169Col, rre2, waterCol, rre2, chitin 30 min2.361.78E-10
GSE21920Col, WT, mockCol, WT, Pto HopZ1a 6 h2.357.45E-06
GSE2538Col, WT, controlCol, WT, crab shell chitin 30 min3.183.56E-08
GSE2538Col, WT, controlCol, WT, purified chitin octamer 30 min2.916.97E-08
GSE26679Col, WT, GC 0 hCol, WT, GC 18 h-1.812.38E-07
GSE26679Col, WT, GC 0 hCol, WT, GC 36 h-1.677.30E-07
GSE26679Col, edr1, GC 0 hCol, edr1, GC 18 h-2.043.04E-08
GSE26679Col, edr1, GC 0 hCol, edr1, GC 36 h-1.684.37E-07
GSE26679Col, edr1, GC 0 hCol, edr1, GC 96 h-1.801.38E-06
GSE40544Col, WT, controlCol, WT, PstDC3000 EV1.701.81E-03
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 12 h2.783.56E-11
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 4 h3.457.61E-12
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 8 h3.412.66E-12
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 12 h3.117.74E-12
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 4 h4.623.67E-14
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 8 h3.441.52E-12
GSE45214Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 4 h3.902.35E-11
GSE45214Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 4 h4.111.50E-11
GSE45214Col, med16, PstDC3000 AvrRpt2 0 hCol, med16, PstDC3000 AvrRpt2 4 h4.568.92E-13
GSE45214Col, npr1, PstDC3000 AvrRpt2 0 hCol, npr1, PstDC3000 AvrRpt2 4 h3.119.98E-10
GSE4746Col, WT, water 30 minCol, WT, chitooctaose 30 min3.839.06E-05
GSE50526Col, WT, mock 9 hCol, WT, A. brassicicola 9 h2.663.41E-05
GSE5520Col, WT, control 10 hCol, WT, Cor- 10 h1.662.00E-02
GSE56094Col, WT, control 11 hCol, WT, PstDC3000 11 h1.664.21E-08
GSE5615Col, WT, water 4 hCol, WT, HrpZ 4 h2.472.13E-06
GSE5616Col, WT, water 6 hCol, WT, P. infestans 6 h1.771.83E-02
GSE58954Col, WT, Psm AvrRpt2 0 hCol, WT, Psm AvrRpt2 6 h3.343.27E-03
GSE6556Col, gh3.5, controlCol, gh3.5, PstDC3000 AvrRpt2 48 h1.903.38E-03
GSE8319Col, WT, controlCol, WT, chitooctaose 30 min3.749.94E-15
GSE9674Ws-4, AtMYB30 ox, controlWs-4, AtMYB30 ox, Xanthomonas strain Xcc147 2-4 h3.861.08E-04
GSE9674Ws-4, AtMYB30 ox, controlWs-4, AtMYB30 ox, Xanthomonas strain Xcc147 6 h3.982.50E-04
GSE9674Ws-4, AtMYB30 ox, controlWs-4, AtMYB30 ox, Xanthomonas strain Xcc147 90-105 min2.613.52E-03
GSE9674Ws-4, WT, controlWs-4, WT, Xanthomonas strain Xcc147 2-4 h3.077.57E-04
GSE9674Ws-4, WT, controlWs-4, WT, Xanthomonas strain Xcc147 6 h3.813.92E-04
GSE9674Ws-4, WT, controlWs-4, WT, Xanthomonas strain Xcc147 90-105 min2.014.35E-03






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