gene detail

Gene description

TAIR ID: AT4G26150

Short description: cytokinin-responsive gata factor 1

Pathogen responsiveness: -0.18

General responsiveness: 0.77

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G039586

Wheat: No orthologous gene

GO biological process

negative regulation of flower development, regulation of gene expression, regulation of chlorophyll biosynthetic process, gibberellic acid mediated signaling pathway, negative regulation of seed germination, response to light stimulus, cell differentiation, circadian rhythm, response to cytokinin

GO cellular component

transcription factor complex, nucleus

GO molecular function

RNA polymerase II regulatory region sequence-specific DNA binding, RNA polymerase II transcription factor binding, zinc ion binding, chromatin binding, transcription factor activity, sequence-specific DNA binding, transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding

Protein domain

Pfam	PF00320, GATA zinc finger
SMART	SM00401, ZnF_GATA

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT3G54340, AT5G20240

Target:
AT2G15890, AT5G26340, AT5G44030, AT4G30270, AT4G35770, AT1G57990, AT2G29350, AT4G29130

Protein-protein interaction network

No Interactor

Coexpression network

GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

15 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17464	Penta, control	Penta, Flg22 2 h	-2.05	1.22E-03
GSE17464	Penta, control	Penta, Flg22 2 h	-1.53	1.44E-02
GSE17500	Col, 35S:AFB1, control 0 h	Col, 35S:AFB1, PstDC3000 24 h	-1.88	3.46E-04
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	-1.63	7.36E-04
GSE17500	Col, miR393, control 0 h	Col, miR393, PstDC3000 24 h	-2.03	1.59E-04
GSE21920	Col, WT, mock	Col, WT, Pto HopZ1a 6 h	-1.83	8.86E-04
GSE37269	Ler0, WT, control	Ler0, WT, TEV 21 d	-1.90	3.65E-02
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-3.13	7.26E-05
GSE40544	Col, WT, control	Col, WT, PstDC3000 EV	-1.74	3.48E-02
GSE40544	Col, Sid2, control	Col, Sid2, PstDC3000 EV	-2.04	2.60E-02
GSE52979	Col, WT, acetone	Col, WT, acetone flg22_2 h	-4.14	2.43E-08
GSE52979	Col, WT, oxo_C14_HSL	Col, WT, oxo_C14_HSL flg22_2 h	-4.28	1.36E-08
GSE5615	Col, WT, water 1 h	Col, WT, Flg22 1 h	-1.67	3.29E-03
GSE5615	Col, WT, water 1 h	Col, WT, HrpZ 1 h	-1.68	3.19E-03
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	-2.13	1.09E-03