Gene: AT4G07950
     

Gene description


TAIR ID: AT4G07950

Short description: DNA-directed RNA polymerase, subunit M, archaeal

Pathogen responsiveness: -1.71

General responsiveness: -2.14

Orthologous


Rice:

OS02G0672700   OS03G0102200  

Maize:

GRMZM2G138407  

Wheat: No orthologous gene

GO biological process


DNA-templated transcription, elongation, mRNA cleavage, regulation of transcription, DNA-templated


GO cellular component


nucleolus, nucleus, cytoplasm


GO molecular function


DNA-directed 5'-3' RNA polymerase activity, nucleic acid binding, zinc ion binding, transcription factor activity, sequence-specific DNA binding


Protein domain


PfamPF01096, Transcription factor S-II (TFIIS)
PfamPF02150, RNA polymerases M/15 Kd subunit
SMARTSM00661, RPOL9
SMARTSM00440, ZnF_C2C2

Metabolic pathway


Not involved in metabolic pathway


Transcriptional regulation


Regulator:
AT4G36990

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 4

click to view PPI network

Differentially expressed condition


3 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE26679Col, WT, GC 0 hCol, WT, GC 18 h1.531.87E-10
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 8 h1.623.92E-11
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 8 h1.612.93E-11






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