gene detail

Gene description

TAIR ID: AT4G03510

Short description: RING membrane-anchor 1

Pathogen responsiveness: -0.28

General responsiveness: 0.08

Orthologous

Rice:

OS04G0530500

Maize:

GRMZM2G040803

Wheat: No orthologous gene

GO biological process

ER-associated misfolded protein catabolic process, ubiquitin-dependent protein catabolic process, secretion by cell, protein ubiquitination involved in ubiquitin-dependent protein catabolic process, protein exit from endoplasmic reticulum

GO cellular component

endoplasmic reticulum, integral component of membrane, nucleus, membrane, Derlin-1 retrotranslocation complex

GO molecular function

metal ion binding, ubiquitin-like protein conjugating enzyme binding, ubiquitin protein ligase activity involved in ERAD pathway, ubiquitin-protein transferase activity

Protein domain

Pfam	PF13923, Zinc finger, C3HC4 type (RING finger)
SMART	SM00184, RING

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath04141: Protein processing in endoplasmic reticulum

Transcriptional regulation

Regulator:
AT5G13790

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 1

click to view PPI network

Coexpression network

GSE26679_WT_GC  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE13739_EDS16_GO  view
GSE26679_EDR1_GC  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

16 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17464	Laer, control	Laer, PstDC3000 12 h	-3.11	4.28E-07
GSE17464	Laer, control	Laer, Flg22 1 h	1.63	5.86E-03
GSE17464	Laer, control	Laer, Flg22 2 h	1.78	2.17E-03
GSE17464	Penta, control	Penta, Alternaria brassicicola 3 d	-1.52	1.18E-02
GSE17464	Penta, control	Penta, PstDC3000 12 h	-3.09	3.45E-07
GSE17464	Penta, control	Penta, Flg22 2 h	1.59	6.08E-03
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-1.74	4.09E-09
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	-1.80	3.02E-09
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	-2.23	1.17E-10
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	-1.75	3.62E-09
GSE45214	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 4 h	-1.66	2.98E-12
GSE45214	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	-1.66	3.87E-12
GSE52979	Col, WT, acetone	Col, WT, acetone flg22_2 h	2.67	1.43E-09
GSE52979	Col, WT, oxo_C14_HSL	Col, WT, oxo_C14_HSL flg22_2 h	3.10	1.68E-10
GSE5615	Col, WT, water 1 h	Col, WT, Flg22 1 h	1.93	4.45E-04
GSE5615	Col, WT, water 1 h	Col, WT, HrpZ 1 h	2.00	2.62E-04