gene detail

Gene description

TAIR ID: AT4G01890

Short description: Pectin lyase-like superfamily protein

Pathogen responsiveness: -2.77

General responsiveness: -2.74

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

carbohydrate metabolic process

GO cellular component

extracellular region

GO molecular function

polygalacturonase activity

Protein domain

Pfam	PF00295, Glycosyl hydrolases family 28
SMART	SM00710, PbH1

Metabolic pathway

PWY-1081: homogalacturonan degradation

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT4G36990

Target:
none

Protein-protein interaction network

No Interactor

Coexpression network

No coexpression gene

Differentially expressed condition

4 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE26679	Col, WT, GC 0 h	Col, WT, GC 18 h	2.05	6.35E-03
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-1.67	1.39E-02
GSE52979	Col, WT, acetone	Col, WT, acetone flg22_24 h	-1.79	2.19E-04
GSE52979	Col, WT, oxo_C14_HSL	Col, WT, oxo_C14_HSL flg22_24 h	-1.69	2.98E-04