gene detail

Gene description

TAIR ID: AT3G61490

Short description: Pectin lyase-like superfamily protein

Pathogen responsiveness: -0.75

General responsiveness: -0.72

Orthologous

Rice:

Maize:

Wheat:

GO biological process

carbohydrate metabolic process

GO cellular component

unkown

GO molecular function

polygalacturonase activity

Protein domain

Pfam	PF00295, Glycosyl hydrolases family 28
SMART	SM00710, PbH1

Metabolic pathway

PWY-1081: homogalacturonan degradation

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT3G16857, AT4G16110

Target:
none

Protein-protein interaction network

No Interactor

Coexpression network

Differentially expressed condition

15 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17464	Laer, JA+Flg22 0 h	Laer, JA+Flg22 1 h	-1.56	5.24E-04
GSE17464	Laer, JA+Flg22 0 h	Laer, JA+Flg22 2 h	-1.75	1.48E-04
GSE17464	Penta, control	Penta, Alternaria brassicicola 3 d	-1.80	6.66E-06
GSE17464	Penta, control	Penta, Flg22 2 h	-1.59	5.69E-05
GSE17464	Penta, control	Penta, Flg22 2 h	-1.64	4.64E-05
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	-1.76	8.76E-04
GSE17500	Col, miR393, control 0 h	Col, miR393, PstDC3000 24 h	-1.65	1.83E-03
GSE45214	Col, npr1, PstDC3000 AvrRpt2 0 h	Col, npr1, PstDC3000 AvrRpt2 4 h	1.98	4.66E-09
GSE52979	Col, WT, acetone	Col, WT, acetone flg22_2 h	-1.76	2.44E-05
GSE52979	Col, WT, oxo_C14_HSL	Col, WT, oxo_C14_HSL flg22_2 h	-2.00	4.69E-06
GSE56094	Col, WT, control 10 h	Col, WT, PstDC3000 10 h	-2.46	3.03E-10
GSE56094	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	-1.87	1.21E-06
GSE56094	Col, WT, control 13 h	Col, WT, PstDC3000 13 h	-2.66	2.34E-11
GSE56094	Col, WT, control 8 h	Col, WT, PstDC3000 8 h	-2.64	8.06E-11
GSE6176	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	-1.54	3.32E-02