gene detail

Gene description

TAIR ID: AT3G57510

Short description: Pectin lyase-like superfamily protein

Pathogen responsiveness: -1.41

General responsiveness: -3.23

Orthologous

Rice: No orthologous gene

Maize:

Wheat: No orthologous gene

GO biological process

carbohydrate metabolic process, fruit dehiscence, cell wall modification involved in abscission, anther dehiscence

GO cellular component

cytoplasm, cell wall, extracellular region

GO molecular function

polygalacturonase activity

Protein domain

Pfam	PF00295, Glycosyl hydrolases family 28
SMART	SM00710, PbH1

Metabolic pathway

PWY-1081: homogalacturonan degradation

KEGG pathway

PATH:ath00040: Pentose and glucuronate interconversions

Transcriptional regulation

Regulator:
AT4G00120, AT5G09750

Target:
none

Protein-protein interaction network

No Interactor

Coexpression network

GSE56094_WT_PSTDC3000 view

Differentially expressed condition

5 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	2.08	4.69E-04
GSE37269	Di2, WT, control	Di2, WT, TEV 21 d	-2.87	3.72E-03
GSE56094	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	1.70	6.84E-11
GSE56094	Col, WT, control 13 h	Col, WT, PstDC3000 13 h	2.37	1.79E-17
GSE6556	Col, gh3.5, control	Col, gh3.5, PstDC3000 AvrRpt2 48 h	2.65	6.75E-07