gene detail

Gene description

TAIR ID: AT3G56980

Short description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Pathogen responsiveness: -1.02

General responsiveness: 0.37

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat:

TAAFFX.56618.1.A1_AT TA.5544.1.A1_AT

GO biological process

iron ion homeostasis, transcription, DNA-templated, regulation of transcription, cellular response to iron ion starvation, regulation of transcription from RNA polymerase II promoter

GO cellular component

nucleus, RNA polymerase II transcription factor complex

GO molecular function

protein dimerization activity, transcription factor activity, sequence-specific DNA binding, protein binding, RNA polymerase II regulatory region sequence-specific DNA binding

Protein domain

Pfam	PF00010, Helix-loop-helix DNA-binding domain
SMART	SM00353, HLH

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT3G55370, AT3G16857, AT4G16110, AT1G07640, AT5G61850

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 2

click to view PPI network

Coexpression network

GSE13739_WT_GO view
GSE13739_EDS16_GO view

Differentially expressed condition

10 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE12856	Col, ataf1, control	Col, ataf1, Bg h	-1.69	5.36E-06
GSE21920	Col, WT, mock	Col, WT, Pto HopZ1a 6 h	-2.00	2.35E-05
GSE37269	Di2, WT, control	Di2, WT, TEV 21 d	3.93	9.97E-07
GSE40544	Col, WT, control	Col, WT, PstDC3000 AvrRpt2	-2.15	2.03E-03
GSE40544	Col, WT, control	Col, WT, PstDC3000 EV	-1.97	3.91E-03
GSE40544	Col, Sid2, control	Col, Sid2, PstDC3000 AvrRpt2	-1.70	1.16E-02
GSE40544	Col, Sid2, control	Col, Sid2, PstDC3000 EV	-1.68	2.33E-02
GSE52979	Col, WT, oxo_C14_HSL	Col, WT, oxo_C14_HSL flg22_2 h	-1.54	1.09E-02
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	-2.00	4.60E-03
GSE6556	Col, gh3.5, control	Col, gh3.5, PstDC3000 AvrRpt2 48 h	-2.73	3.69E-05