gene detail

Gene description

TAIR ID: AT3G56970

Short description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Pathogen responsiveness: NA

General responsiveness: NA

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat:

TAAFFX.56618.1.A1_AT TA.5544.1.A1_AT

GO biological process

regulation of transcription, DNA-templated, cellular response to iron ion starvation, transcription, iron ion homeostasis, regulation of transcription from RNA polymerase II promoter

GO cellular component

RNA polymerase II transcription factor complex, nucleus

GO molecular function

transcription factor activity, sequence-specific DNA binding, RNA polymerase II regulatory region sequence-specific DNA binding, protein binding, protein dimerization activity

Protein domain

Pfam	PF00010, Helix-loop-helix DNA-binding domain
SMART	SM00353, HLH

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT3G55370, AT3G16857, AT4G16110, AT1G07640

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 1

click to view PPI network

Coexpression network

GSE56094_WT_PSTDC3000 view

Differentially expressed condition

8 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE37269	Di2, WT, control	Di2, WT, TEV 21 d	4.33	6.99E-08
GSE37269	St0, WT, control	St0, WT, TEV 21 d	1.75	9.90E-03
GSE37269	Wt1, WT, control	Wt1, WT, TEV 21 d	2.22	5.89E-03
GSE40544	Col, WT, control	Col, WT, PstDC3000 AvrRpt2	-2.79	2.79E-03
GSE40544	Col, WT, control	Col, WT, PstDC3000 EV	-2.46	6.89E-03
GSE40544	Col, Sid2, control	Col, Sid2, PstDC3000 AvrRpt2	-2.54	5.88E-03
GSE40544	Col, Sid2, control	Col, Sid2, PstDC3000 EV	-2.40	1.66E-02
GSE52979	Col, WT, oxo_C14_HSL	Col, WT, oxo_C14_HSL flg22_2 h	-1.62	6.43E-03