Gene: AT3G54650
     


Gene description


TAIR ID: AT3G54650

Short description: RNI-like superfamily protein

Pathogen responsiveness: -1.83

General responsiveness: -1.55

Orthologous


Rice: No orthologous gene
Maize:

GRMZM2G100121  

Wheat: No orthologous gene

GO biological process


SCF-dependent proteasomal ubiquitin-dependent protein catabolic process, embryo development, protein ubiquitination, ubiquitin-dependent protein catabolic process, generative cell mitosis, pollen development, seed development


GO cellular component


male germ cell nucleus, chloroplast, SCF ubiquitin ligase complex


GO molecular function


ubiquitin-protein transferase activity, protein binding


Protein domain


PfamPF00646, F-box domain
SMARTSM00367, LRR_CC

Metabolic pathway


Not involved in metabolic pathway


KEGG pathway


Not involved in KEGG pathway


Transcriptional regulation


Regulator:
AT2G36010, AT1G62300, AT4G31550, AT5G02470

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 12 (Top20%)

click to view PPI network

Differentially expressed condition


3 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE26679Col, WT, GC 0 hCol, WT, GC 18 h1.622.21E-08
GSE26679Col, WT, GC 0 hCol, WT, GC 36 h1.534.89E-08
GSE37269Ei2, WT, controlEi2, WT, TEV 21 d-1.771.26E-02






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