gene detail

Gene description

TAIR ID: AT3G45590

Short description: splicing endonuclease 1

Pathogen responsiveness: -1.84

General responsiveness: -1.21

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G036991

Wheat: No orthologous gene

GO biological process

tRNA splicing, via endonucleolytic cleavage and ligation, tRNA-type intron splice site recognition and cleavage, zygote asymmetric cytokinesis in embryo sac, mRNA processing

GO cellular component

tRNA-intron endonuclease complex, nucleus

GO molecular function

tRNA-intron endonuclease activity, lyase activity

Protein domain

Pfam	PF02778, tRNA intron endonuclease, N-terminal domain
Pfam	PF01974, tRNA intron endonuclease, catalytic C-terminal domain

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT2G38250

Target:
none

Protein-protein interaction network

No Interactor

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE26679_WT_GC  view
GSE13739_WT_GO  view
GSE26679_EDR1_GC  view

Differentially expressed condition

5 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	1.52	3.22E-07
GSE26679	Col, WT, GC 0 h	Col, WT, GC 18 h	1.78	1.62E-09
GSE26679	Col, WT, GC 0 h	Col, WT, GC 36 h	1.60	8.56E-09
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 18 h	1.70	3.42E-09
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 36 h	1.87	3.29E-10