gene detail

Gene description

TAIR ID: AT3G42950

Short description: Pectin lyase-like superfamily protein

Pathogen responsiveness: -3.13

General responsiveness: -3.41

Orthologous

Rice:

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

carbohydrate metabolic process, cell wall organization

GO cellular component

chloroplast, integral component of membrane, extracellular region

GO molecular function

polygalacturonase activity, lyase activity

Protein domain

Pfam	PF00295, Glycosyl hydrolases family 28
SMART	SM00710, PbH1

Metabolic pathway

PWY-1081: homogalacturonan degradation

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT4G23810

Target:
none

Protein-protein interaction network

No Interactor

Coexpression network

GSE56094_WT_HRPA- view

Differentially expressed condition

2 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-1.51	2.58E-02
GSE37269	Wt1, WT, control	Wt1, WT, TEV 21 d	-1.77	3.87E-02