gene detail

Gene description

TAIR ID: AT3G22150

Short description: Tetratricopeptide repeat (TPR)-like superfamily protein

Pathogen responsiveness: -0.08

General responsiveness: 1.42

Orthologous

Rice:

OS04G0602600

Maize:

GRMZM2G456123

Wheat: No orthologous gene

GO biological process

mitochondrial mRNA modification, chloroplast RNA modification

GO cellular component

chloroplast, plastid

GO molecular function

4-aminobutyrate transaminase activity, endonuclease activity, RNA binding

Protein domain

Pfam	PF13041, PPR repeat family
Pfam	PF01535, PPR repeat

Metabolic pathway

PWY-3781: aerobic respiration (cytochrome c)

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT5G61850

Target:
none

Protein-protein interaction network

No Interactor

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view

Differentially expressed condition

24 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE12856	Col, WT, control	Col, WT, Bg h	-2.11	2.35E-07
GSE12856	Col, ataf1, control	Col, ataf1, Bg h	-2.28	7.83E-08
GSE17464	Laer, control	Laer, Flg22 1 h	-2.09	1.73E-04
GSE17464	Laer, control	Laer, Flg22 2 h	-2.05	2.44E-04
GSE17464	Penta, control	Penta, Flg22 2 h	-2.06	2.15E-04
GSE17464	Penta, control	Penta, Flg22 2 h	-2.11	1.49E-04
GSE17500	Col, 35S:AFB1, control 0 h	Col, 35S:AFB1, PstDC3000 24 h	-1.76	8.79E-05
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	-1.77	4.50E-05
GSE17500	Col, miR393, control 0 h	Col, miR393, PstDC3000 24 h	-1.97	2.94E-05
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-2.31	2.34E-10
GSE21920	Col, WT, mock	Col, WT, Pto HopZ1a 6 h	-1.80	4.80E-07
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-2.16	1.15E-02
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-1.94	1.49E-02
GSE40544	Col, WT, control	Col, WT, PstDC3000 AvrRpt2	-2.08	2.97E-05
GSE40544	Col, WT, control	Col, WT, PstDC3000 EV	-2.75	1.25E-06
GSE40544	Col, Sid2, control	Col, Sid2, PstDC3000 AvrRpt2	-2.04	3.71E-05
GSE45214	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	-1.73	3.50E-10
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	-2.22	2.90E-12
GSE50526	Col, WT, mock 9 h	Col, WT, A. brassicicola 9 h	-1.84	2.19E-02
GSE52979	Col, WT, acetone	Col, WT, acetone flg22_2 h	-1.88	6.91E-05
GSE52979	Col, WT, oxo_C14_HSL	Col, WT, oxo_C14_HSL flg22_2 h	-1.82	8.28E-05
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	-1.97	7.05E-04
GSE5520	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	-2.04	5.25E-05
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	-2.24	1.28E-03