Gene: AT3G15970
     

Gene description


TAIR ID: AT3G15970

Short description: NUP50 (Nucleoporin 50 kDa) protein

Pathogen responsiveness: -2.04

General responsiveness: -2.32

Orthologous


Rice: No orthologous gene
Maize:

GRMZM2G157317  

Wheat:

TAAFFX.1929.1.S1_AT  TAAFFX.1929.1.S1_S_AT  


GO biological process


mRNA transport, protein transport, intracellular transport


GO cellular component


nucleus, nuclear pore, cytosol, nucleoplasm


GO molecular function


unkown


Protein domain


PfamPF00638, RanBP1 domain
PfamPF08911, NUP50 (Nucleoporin 50 kDa)
SMARTSM00160, RanBD

Metabolic pathway


Not involved in metabolic pathway


KEGG pathway


Not involved in KEGG pathway


Transcriptional regulation


Regulator:
AT5G61850

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 2

click to view PPI network

Differentially expressed condition


3 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE37269St0, WT, controlSt0, WT, TEV 21 d-2.351.97E-04
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 12 h-1.527.08E-11
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 8 h-1.517.10E-11






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