Gene: AT3G09840
     


Gene description


TAIR ID: AT3G09840

Short description: cell division cycle 48

Pathogen responsiveness: -1.26

General responsiveness: -1.19

Orthologous


Rice: No orthologous gene
Maize: No orthologous gene
Wheat: No orthologous gene

GO biological process


protein destabilization, pollen germination, response to cadmium ion, pollen tube growth, negative regulation of defense response, cell cycle, cell division, protein transport


GO cellular component


phragmoplast, cytosolic ribosome, cytosol, nucleolus, Golgi apparatus, cell wall, nuclear envelope, plasmodesma, apoplast, spindle, plasma membrane, cytoplasm, nucleus


GO molecular function


identical protein binding, protein binding, ATP binding, ATPase activity, hydrolase activity


Protein domain


PfamPF02933, Cell division protein 48 (CDC48), domain 2
PfamPF00004, ATPase family associated with various cellular activities (AAA)
PfamPF02359, Cell division protein 48 (CDC48), N-terminal domain
SMARTSM01072, CDC48_2
SMARTSM00382, AAA
SMARTSM01073, CDC48_N

Metabolic pathway


Not involved in metabolic pathway


Transcriptional regulation


Regulator:
AT1G73805, AT5G26920

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 20 (Top10%)

click to view PPI network

Differentially expressed condition


5 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE18978Col, WT, control 24 hCol, WT, PsmES4326 24 h2.074.32E-10
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 12 h1.697.62E-07
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 12 h2.845.51E-10
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 4 h1.872.25E-07
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 8 h2.835.21E-10






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