gene detail

Gene description

TAIR ID: AT3G07590

Short description: Small nuclear ribonucleoprotein family protein

Pathogen responsiveness: -2.05

General responsiveness: -0.31

Orthologous

Rice:

OS02G0586500 OS01G0256900 OS08G0154700

Maize:

GRMZM2G416061 GRMZM2G027571

Wheat: No orthologous gene

GO biological process

spliceosomal complex assembly, spliceosomal snRNP assembly, posttranscriptional gene silencing by RNA

GO cellular component

U2 snRNP, nucleus, U5 snRNP, nucleolus, vacuolar membrane, U1 snRNP, U12-type spliceosomal complex, precatalytic spliceosome, nuclear speck, SMN-Sm protein complex, commitment complex, U4 snRNP, spliceosomal tri-snRNP complex, catalytic step 2 spliceosome, prespliceosome, pICln-Sm protein complex, small nucleolar ribonucleoprotein complex, cytosol

GO molecular function

RNA binding

Protein domain

Pfam	PF01423, LSM domain
SMART	SM00651, Sm

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath03040: Spliceosome

Transcriptional regulation

Regulator:
AT4G36990, AT4G31800

Target:
none

Protein-protein interaction network

No Interactor

Coexpression network

GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view

Differentially expressed condition

1 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	1.70	1.46E-03