gene detail

Gene description

TAIR ID: AT3G05200

Short description: RING/U-box superfamily protein

Pathogen responsiveness: 0.23

General responsiveness: -0.52

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G015753

Wheat:

TA.5351.1.S1_AT

GO biological process

defense response to bacterium, incompatible interaction, protein ubiquitination, response to chitin, proteasome-mediated ubiquitin-dependent protein catabolic process

GO cellular component

integral component of membrane, plasma membrane, extracellular region

GO molecular function

metal ion binding, defense response, incompatible interaction, ubiquitin-protein transferase activity, ubiquitin protein ligase activity

Protein domain

Pfam	PF13639, Ring finger domain
SMART	SM00184, RING

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT5G61850

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 1

click to view PPI network

Coexpression network

GSE26679_WT_GC  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE13739_EDS16_GO  view
GSE26679_EDR1_GC  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

33 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE11807	Col, WT, water 4 h	Col, WT, Flg22 4 h	2.18	2.42E-02
GSE12856	Col, ataf1, control	Col, ataf1, Bg h	1.57	2.47E-08
GSE17464	Laer, control	Laer, Flg22 1 h	1.71	1.04E-04
GSE17464	Penta, control	Penta, Flg22 2 h	1.51	5.52E-04
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	2.20	1.23E-08
GSE2538	Col, WT, control	Col, WT, crab shell chitin 30 min	1.75	1.44E-06
GSE2538	Col, WT, control	Col, WT, purified chitin octamer 30 min	1.62	2.86E-06
GSE26679	Col, WT, GC 0 h	Col, WT, GC 18 h	1.50	6.83E-08
GSE26679	Col, WT, GC 0 h	Col, WT, GC 36 h	1.57	2.79E-08
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 36 h	1.70	4.31E-09
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-2.14	1.16E-02
GSE40544	Col, WT, control	Col, WT, PstDC3000 EV	1.52	1.48E-03
GSE40544	Col, Sid2, control	Col, Sid2, PstDC3000 AvrRpt2	1.53	1.52E-03
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	1.59	1.07E-09
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	1.95	6.51E-11
GSE45214	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 4 h	1.91	1.56E-10
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	1.87	8.76E-11
GSE45214	Col, npr1, PstDC3000 AvrRpt2 0 h	Col, npr1, PstDC3000 AvrRpt2 4 h	1.93	1.87E-10
GSE4746	Col, WT, water 30 min	Col, WT, chitooctaose 30 min	1.76	1.87E-04
GSE50526	Col, WT, mock 24 h	Col, WT, A. brassicicola 24 h	2.39	8.15E-04
GSE50526	Col, WT, mock 9 h	Col, WT, A. brassicicola 9 h	3.16	1.66E-05
GSE52979	Col, WT, acetone	Col, WT, acetone flg22_2 h	1.88	6.80E-09
GSE52979	Col, WT, oxo_C14_HSL	Col, WT, oxo_C14_HSL flg22_2 h	2.19	7.88E-10
GSE5615	Col, WT, GST 4 h	Col, WT, GST+NPP1 4 h	1.62	7.43E-06
GSE5615	Col, WT, water 4 h	Col, WT, Flg22 4 h	1.78	9.69E-07
GSE5615	Col, WT, water 4 h	Col, WT, HrpZ 4 h	2.73	1.25E-10
GSE5616	Col, WT, water 12 h	Col, WT, P. infestans 12 h	1.64	2.50E-06
GSE5616	Col, WT, water 6 h	Col, WT, P. infestans 6 h	1.68	6.55E-07
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	1.51	2.12E-02
GSE6556	Col, WT, control	Col, WT, PstDC3000 AvrRpt2 48 h	1.57	2.98E-04
GSE6556	Col, gh3.5, control	Col, gh3.5, PstDC3000 AvrRpt2 48 h	2.24	2.76E-06
GSE9674	Ws-4, AtMYB30 ox, control	Ws-4, AtMYB30 ox, Xanthomonas strain Xcc147 2-4 h	1.95	3.71E-04
GSE9674	Ws-4, AtMYB30 ox, control	Ws-4, AtMYB30 ox, Xanthomonas strain Xcc147 6 h	1.53	4.13E-03