gene detail

Gene description

TAIR ID: AT3G04580

Short description: Signal transduction histidine kinase, hybrid-type, ethylene sensor

Pathogen responsiveness: -1.08

General responsiveness: -1.81

Orthologous

Rice:

OS04G0169100 OS03G0701700

Maize:

GRMZM2G420801

Wheat: No orthologous gene

GO biological process

ethylene-activated signaling pathway, negative regulation of ethylene-activated signaling pathway

GO cellular component

endoplasmic reticulum, endoplasmic reticulum membrane, integral component of membrane

GO molecular function

phosphorelay sensor kinase activity, protein serine/threonine kinase activity, protein histidine kinase activity, ATP binding, ethylene receptor activity, receptor activity, metal ion binding

Protein domain

Pfam	PF00072, Response regulator receiver domain
Pfam	PF01590, GAF domain
Pfam	PF02518, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
SMART	SM00448, REC
SMART	SM00065, GAF
SMART	SM00388, HisKA

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath04016: MAPK signaling pathway - plant
PATH:ath04075: Plant hormone signal transduction

Transcriptional regulation

Regulator:
AT5G61850

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 3

click to view PPI network

Coexpression network

GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view

Differentially expressed condition

8 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE12856	Col, ataf1, control	Col, ataf1, Bg h	1.58	2.23E-07
GSE17464	Laer, control	Laer, Flg22 1 h	1.53	2.61E-05
GSE17464	Laer, control	Laer, Flg22 2 h	1.87	1.58E-06
GSE17464	Penta, control	Penta, Flg22 2 h	1.72	5.47E-06
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	1.71	1.04E-04
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	1.55	5.42E-08
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	1.92	9.91E-10
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	1.88	1.68E-03