gene detail

Gene description

TAIR ID: AT3G01650

Short description: RING domain ligase1

Pathogen responsiveness: -1.16

General responsiveness: -0.78

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

negative regulation of response to water deprivation, abscisic acid-activated signaling pathway, auxin metabolic process, cytokinin metabolic process, protein K63-linked ubiquitination, positive regulation of abscisic acid-activated signaling pathway

GO cellular component

plasma membrane, nucleus

GO molecular function

protein binding, ubiquitin-protein transferase activity, metal ion binding

Protein domain

Pfam	PF07002, Copine
Pfam	PF13920, Zinc finger, C3HC4 type (RING finger)
SMART	SM00327, VWA

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT3G16857, AT4G16110, AT5G41315, AT4G36990

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 2

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE26679_WT_GC  view
GSE56094_WT_HRPA-  view

Differentially expressed condition

6 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17464	Laer, control	Laer, Flg22 1 h	1.55	9.10E-03
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-2.53	7.93E-05
GSE50526	Col, WT, mock 9 h	Col, WT, A. brassicicola 9 h	2.93	5.98E-03
GSE5520	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	1.79	3.31E-04
GSE6176	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	1.55	2.72E-04
GSE9674	Ws-4, AtMYB30 ox, control	Ws-4, AtMYB30 ox, Xanthomonas strain Xcc147 6 h	1.70	5.54E-06