gene detail

Gene description

TAIR ID: AT2G47240

Short description: AMP-dependent synthetase and ligase family protein

Pathogen responsiveness: -0.93

General responsiveness: 1.45

Orthologous

Rice:

OS05G0132100

Maize:

GRMZM2G101875

Wheat: No orthologous gene

GO biological process

fatty acid metabolic process, wax biosynthetic process, cutin biosynthetic process, fatty acid biosynthetic process, metabolic process

GO cellular component

nucleus, endoplasmic reticulum

GO molecular function

long-chain fatty acid-CoA ligase activity, ATP binding, decanoate--CoA ligase activity, ligase activity, very long-chain fatty acid-CoA ligase activity

Protein domain

Pfam	PF00501, AMP-binding enzyme

Metabolic pathway

PWY-5136: fatty acid β-oxidation II (peroxisome)
PWY-5995: linoleate biosynthesis I (plants)
PWY-5143: fatty acid activation
PWY-6803: phosphatidylcholine acyl editing

KEGG pathway

PATH:ath01212: Fatty acid metabolism
PATH:ath00061: Fatty acid biosynthesis
PATH:ath00071: Fatty acid degradation
PATH:ath04146: Peroxisome

Transcriptional regulation

Regulator:
AT5G61850

Target:
none

Protein-protein interaction network

No Interactor

Coexpression network

GSE26679_WT_GC  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE26679_EDR1_GC  view

Differentially expressed condition

5 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE13739	Col, WT, control 7 d	Col, WT, G.orontii 7 d	2.50	7.35E-12
GSE13739	Col, eds, control 7 d	Col, eds, G.orontii 7 d	2.42	4.08E-11
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-1.77	1.37E-02
GSE5520	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	-2.13	3.86E-07
GSE5686	Col, WT, control 5 d	Col, WT, G.orontii 5 d	2.09	8.29E-11