gene detail

Gene description

TAIR ID: AT2G42740

Short description: ribosomal protein large subunit 16A

Pathogen responsiveness: -1.43

General responsiveness: -0.83

Orthologous

Rice:

Maize:

Wheat:

GO biological process

translation, ribosomal large subunit assembly

GO cellular component

cytosolic large ribosomal subunit, chloroplast, cytoplasm, nucleolus, vacuole, plasmodesma, cytosol

GO molecular function

RNA binding, rRNA binding, structural constituent of ribosome

Protein domain

Pfam	PF00673, ribosomal L5P family C-terminus
Pfam	PF00281, Ribosomal protein L5

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath03010: Ribosome

Transcriptional regulation

Regulator:
AT5G13790

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 10 (Top20%)

Coexpression network

Differentially expressed condition

4 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17500	Col, 35S:AFB1, control 0 h	Col, 35S:AFB1, PstDC3000 24 h	-1.58	9.37E-05
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-1.81	5.14E-07
GSE40544	Col, Sid2, control	Col, Sid2, PstDC3000 AvrRpt2	-1.71	9.11E-04
GSE6556	Col, gh3.5, control	Col, gh3.5, PstDC3000 AvrRpt2 48 h	-1.82	1.95E-04